Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Snrnp40Q6PE01 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
Snrnp40Q6PE01 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Snrnp40Q6PE01 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Snrnp40Q6PE01 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Snrnp40Q6PE01 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Snrnp40Q6PE01 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Mir6982-201ENSMUST00000184354 68 ntBASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC17.12■□□□□ 0.33
Snrnp40Q6PE01 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Gm26524-201ENSMUST00000192339 390 ntBASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
Snrnp40Q6PE01 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Rab3c-203ENSMUST00000224180 967 ntBASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Snrnp40Q6PE01 Cdkn3-203ENSMUST00000227149 1952 ntBASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Snrnp40Q6PE01 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Snrnp40Q6PE01 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Snrnp40Q6PE01 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Snrnp40Q6PE01 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Snrnp40Q6PE01 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.08■□□□□ 0.33
Snrnp40Q6PE01 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Snrnp40Q6PE01 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.07■□□□□ 0.32
Snrnp40Q6PE01 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Snrnp40Q6PE01 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Snrnp40Q6PE01 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Snrnp40Q6PE01 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Snrnp40Q6PE01 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Snrnp40Q6PE01 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Snrnp40Q6PE01 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Snrnp40Q6PE01 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Snrnp40Q6PE01 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Snrnp40Q6PE01 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms