Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col27a1Q5QNQ9 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col27a1Q5QNQ9 Gm11249-201ENSMUST00000117071 859 ntBASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col27a1Q5QNQ9 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Gm9987-201ENSMUST00000069768 567 ntBASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Gm10819-201ENSMUST00000099988 561 ntBASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col27a1Q5QNQ9 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Gm43799-201ENSMUST00000201845 579 ntBASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col27a1Q5QNQ9 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col27a1Q5QNQ9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 Gm2399-201ENSMUST00000104944 225 ntBASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Col27a1Q5QNQ9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Col27a1Q5QNQ9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Col27a1Q5QNQ9 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Col27a1Q5QNQ9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.02■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms