Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Gm5408-201ENSMUST00000197998 747 ntBASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.49■□□□□ 0.87
Upf3aQ3ULJ3 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Gm6211-202ENSMUST00000167849 925 ntBASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Upf3aQ3ULJ3 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.47■□□□□ 0.87
Upf3aQ3ULJ3 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3aQ3ULJ3 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3aQ3ULJ3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3aQ3ULJ3 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Upf3aQ3ULJ3 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Gm37035-201ENSMUST00000194809 2148 ntBASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Upf3aQ3ULJ3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Upf3aQ3ULJ3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.45■□□□□ 0.86
Upf3aQ3ULJ3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Gm22240-201ENSMUST00000175225 82 ntBASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Upf3aQ3ULJ3 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Upf3aQ3ULJ3 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Gm20049-201ENSMUST00000219950 730 ntBASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Upf3aQ3ULJ3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Gm7860-201ENSMUST00000121190 879 ntBASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Gm8520-201ENSMUST00000186517 868 ntBASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Upf3aQ3ULJ3 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms