Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sox3P53784 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Sox3P53784 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sox3P53784 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.5■□□□□ 0.55
Sox3P53784 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sox3P53784 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Sox3P53784 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Sox3P53784 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Sox3P53784 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Sox3P53784 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Sox3P53784 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Sox3P53784 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Sox3P53784 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.48■□□□□ 0.55
Sox3P53784 Gm12441-201ENSMUST00000121806 588 ntBASIC18.48■□□□□ 0.55
Sox3P53784 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.48■□□□□ 0.55
Sox3P53784 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Sox3P53784 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.48■□□□□ 0.55
Sox3P53784 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Sox3P53784 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.48■□□□□ 0.55
Sox3P53784 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Sox3P53784 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.48■□□□□ 0.55
Sox3P53784 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sox3P53784 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.47■□□□□ 0.55
Sox3P53784 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sox3P53784 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.47■□□□□ 0.55
Sox3P53784 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.47■□□□□ 0.55
Sox3P53784 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Sox3P53784 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
Sox3P53784 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sox3P53784 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Sox3P53784 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.46■□□□□ 0.55
Sox3P53784 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sox3P53784 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.46■□□□□ 0.55
Sox3P53784 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Sox3P53784 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sox3P53784 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sox3P53784 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sox3P53784 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Sox3P53784 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.45■□□□□ 0.54
Sox3P53784 Gm22240-201ENSMUST00000175225 82 ntBASIC18.45■□□□□ 0.54
Sox3P53784 Gm43530-201ENSMUST00000195920 274 ntBASIC18.45■□□□□ 0.54
Sox3P53784 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Sox3P53784 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
Sox3P53784 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Sox3P53784 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.43■□□□□ 0.54
Sox3P53784 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Sox3P53784 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
Sox3P53784 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Sox3P53784 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Sox3P53784 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Sox3P53784 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 AC165080.2-201ENSMUST00000217491 1530 ntBASIC18.42■□□□□ 0.54
Sox3P53784 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Sox3P53784 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Sox3P53784 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Sox3P53784 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 14.8 ms