Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Gm27454-201ENSMUST00000185090 204 ntBASIC17.12■□□□□ 0.33
P20040 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.12■□□□□ 0.33
P20040 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
P20040 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.12■□□□□ 0.33
P20040 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.12■□□□□ 0.33
P20040 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
P20040 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
P20040 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Gm43909-201ENSMUST00000203443 1876 ntBASIC17.11■□□□□ 0.33
P20040 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
P20040 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC17.11■□□□□ 0.33
P20040 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
P20040 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
P20040 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.1■□□□□ 0.33
P20040 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC17.1■□□□□ 0.33
P20040 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
P20040 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
P20040 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
P20040 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
P20040 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
P20040 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
P20040 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
P20040 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
P20040 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.08■□□□□ 0.33
P20040 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
P20040 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
P20040 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
P20040 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
P20040 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
P20040 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC17.08■□□□□ 0.32
P20040 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
P20040 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
P20040 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
P20040 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC17.07■□□□□ 0.32
P20040 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.07■□□□□ 0.32
P20040 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC17.07■□□□□ 0.32
P20040 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Golph3-205ENSMUST00000228671 2842 ntBASIC17.07■□□□□ 0.32
P20040 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
P20040 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
P20040 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
P20040 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
P20040 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.06■□□□□ 0.32
P20040 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.05■□□□□ 0.32
P20040 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.05■□□□□ 0.32
P20040 Gm45417-201ENSMUST00000209533 758 ntBASIC17.05■□□□□ 0.32
P20040 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
P20040 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms