Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx1P18111 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Cdx1P18111 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC15.52■□□□□ 0.08
Cdx1P18111 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx1P18111 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdx1P18111 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx1P18111 Gm40881-201ENSMUST00000223397 166 ntBASIC15.52■□□□□ 0.08
Cdx1P18111 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Cdx1P18111 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx1P18111 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx1P18111 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Cdx1P18111 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx1P18111 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Cdx1P18111 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdx1P18111 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC15.51■□□□□ 0.07
Cdx1P18111 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdx1P18111 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC15.51■□□□□ 0.07
Cdx1P18111 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Cdx1P18111 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC15.51■□□□□ 0.07
Cdx1P18111 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Cdx1P18111 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx1P18111 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
Cdx1P18111 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC15.5■□□□□ 0.07
Cdx1P18111 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.5■□□□□ 0.07
Cdx1P18111 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx1P18111 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Cdx1P18111 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx1P18111 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Cdx1P18111 Gm5913-201ENSMUST00000119397 1399 ntBASIC15.49■□□□□ 0.07
Cdx1P18111 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Gm5953-201ENSMUST00000220644 2616 ntBASIC15.48■□□□□ 0.07
Cdx1P18111 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Cdx1P18111 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Cdx1P18111 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC15.48■□□□□ 0.07
Cdx1P18111 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Cdx1P18111 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Gm11847-201ENSMUST00000125165 1119 ntBASIC15.47■□□□□ 0.07
Cdx1P18111 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Gm22238-201ENSMUST00000175222 88 ntBASIC15.47■□□□□ 0.07
Cdx1P18111 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC15.47■□□□□ 0.07
Cdx1P18111 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Gm9847-201ENSMUST00000052528 599 ntBASIC15.47■□□□□ 0.07
Cdx1P18111 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
Cdx1P18111 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Cdx1P18111 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Cdx1P18111 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Cdx1P18111 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC15.47■□□□□ 0.07
Cdx1P18111 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC15.47■□□□□ 0.07
Cdx1P18111 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Cdx1P18111 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Cdx1P18111 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms