Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Msx1P13297 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.35■□□□□ 0.53
Msx1P13297 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Msx1P13297 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC18.34■□□□□ 0.53
Msx1P13297 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.34■□□□□ 0.53
Msx1P13297 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Gm12933-201ENSMUST00000120203 872 ntBASIC18.34■□□□□ 0.53
Msx1P13297 Gm11421-201ENSMUST00000122124 294 ntBASIC18.34■□□□□ 0.53
Msx1P13297 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC18.34■□□□□ 0.53
Msx1P13297 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC18.34■□□□□ 0.53
Msx1P13297 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Msx1P13297 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Msx1P13297 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC18.33■□□□□ 0.52
Msx1P13297 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msx1P13297 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Msx1P13297 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.33■□□□□ 0.52
Msx1P13297 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.33■□□□□ 0.52
Msx1P13297 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Msx1P13297 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Msx1P13297 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC18.32■□□□□ 0.52
Msx1P13297 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.32■□□□□ 0.52
Msx1P13297 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.32■□□□□ 0.52
Msx1P13297 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Msx1P13297 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.32■□□□□ 0.52
Msx1P13297 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.31■□□□□ 0.52
Msx1P13297 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.31■□□□□ 0.52
Msx1P13297 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.31■□□□□ 0.52
Msx1P13297 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC18.31■□□□□ 0.52
Msx1P13297 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Msx1P13297 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.31■□□□□ 0.52
Msx1P13297 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Msx1P13297 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Msx1P13297 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Msx1P13297 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.3■□□□□ 0.52
Msx1P13297 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Msx1P13297 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.3■□□□□ 0.52
Msx1P13297 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.3■□□□□ 0.52
Msx1P13297 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.3■□□□□ 0.52
Msx1P13297 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC18.3■□□□□ 0.52
Msx1P13297 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Msx1P13297 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Msx1P13297 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 5830487J09Rik-201ENSMUST00000198600 1256 ntTSL 5 BASIC18.29■□□□□ 0.52
Msx1P13297 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Msx1P13297 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Msx1P13297 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Msx1P13297 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.28■□□□□ 0.52
Msx1P13297 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Msx1P13297 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms