Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Chmp6P0C0A3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.01■□□□□ 0.95
Chmp6P0C0A3 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC21■□□□□ 0.95
Chmp6P0C0A3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC21■□□□□ 0.95
Chmp6P0C0A3 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21■□□□□ 0.95
Chmp6P0C0A3 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Chmp6P0C0A3 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Chmp6P0C0A3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Chmp6P0C0A3 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
Chmp6P0C0A3 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Chmp6P0C0A3 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Chmp6P0C0A3 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Gm26833-201ENSMUST00000180899 440 ntBASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Gm40848-201ENSMUST00000221998 324 ntBASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Chmp6P0C0A3 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Chmp6P0C0A3 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Chmp6P0C0A3 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.94■□□□□ 0.94
Chmp6P0C0A3 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Chmp6P0C0A3 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms