Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.65■□□□□ 0.9
TnfP06804 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TnfP06804 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC20.65■□□□□ 0.9
TnfP06804 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TnfP06804 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC20.65■□□□□ 0.9
TnfP06804 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TnfP06804 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TnfP06804 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TnfP06804 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.9
TnfP06804 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC20.64■□□□□ 0.9
TnfP06804 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TnfP06804 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TnfP06804 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TnfP06804 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TnfP06804 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.64■□□□□ 0.89
TnfP06804 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TnfP06804 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TnfP06804 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.63■□□□□ 0.89
TnfP06804 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TnfP06804 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.63■□□□□ 0.89
TnfP06804 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TnfP06804 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.62■□□□□ 0.89
TnfP06804 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Gm38205-201ENSMUST00000192243 258 ntBASIC20.62■□□□□ 0.89
TnfP06804 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.62■□□□□ 0.89
TnfP06804 Gm7514-201ENSMUST00000209475 934 ntBASIC20.62■□□□□ 0.89
TnfP06804 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.62■□□□□ 0.89
TnfP06804 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TnfP06804 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.62■□□□□ 0.89
TnfP06804 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.62■□□□□ 0.89
TnfP06804 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
TnfP06804 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC20.61■□□□□ 0.89
TnfP06804 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC20.61■□□□□ 0.89
TnfP06804 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
TnfP06804 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TnfP06804 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TnfP06804 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.6■□□□□ 0.89
TnfP06804 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TnfP06804 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.6■□□□□ 0.89
TnfP06804 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
TnfP06804 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TnfP06804 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.59■□□□□ 0.89
TnfP06804 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TnfP06804 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TnfP06804 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC20.59■□□□□ 0.89
TnfP06804 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TnfP06804 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.59■□□□□ 0.89
TnfP06804 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TnfP06804 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TnfP06804 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TnfP06804 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TnfP06804 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
TnfP06804 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.58■□□□□ 0.88
TnfP06804 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TnfP06804 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
TnfP06804 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Gm13146-201ENSMUST00000118508 780 ntBASIC20.57■□□□□ 0.88
TnfP06804 Gm5297-201ENSMUST00000198555 1171 ntBASIC20.57■□□□□ 0.88
TnfP06804 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TnfP06804 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TnfP06804 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TnfP06804 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TnfP06804 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.56■□□□□ 0.88
TnfP06804 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TnfP06804 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.56■□□□□ 0.88
TnfP06804 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms