Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.75■□□□□ 0.43
Col5a1O88207 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.75■□□□□ 0.43
Col5a1O88207 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Col5a1O88207 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col5a1O88207 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Col5a1O88207 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.74■□□□□ 0.43
Col5a1O88207 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC17.74■□□□□ 0.43
Col5a1O88207 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col5a1O88207 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col5a1O88207 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col5a1O88207 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col5a1O88207 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.73■□□□□ 0.43
Col5a1O88207 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.73■□□□□ 0.43
Col5a1O88207 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.73■□□□□ 0.43
Col5a1O88207 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC17.73■□□□□ 0.43
Col5a1O88207 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col5a1O88207 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Col5a1O88207 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.72■□□□□ 0.43
Col5a1O88207 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Col5a1O88207 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.72■□□□□ 0.43
Col5a1O88207 Gm6211-202ENSMUST00000167849 925 ntBASIC17.72■□□□□ 0.43
Col5a1O88207 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Col5a1O88207 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.72■□□□□ 0.43
Col5a1O88207 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.72■□□□□ 0.43
Col5a1O88207 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col5a1O88207 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.71■□□□□ 0.43
Col5a1O88207 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col5a1O88207 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Col5a1O88207 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.7■□□□□ 0.42
Col5a1O88207 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col5a1O88207 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col5a1O88207 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Col5a1O88207 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.7■□□□□ 0.42
Col5a1O88207 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Col5a1O88207 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Col5a1O88207 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.69■□□□□ 0.42
Col5a1O88207 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col5a1O88207 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.69■□□□□ 0.42
Col5a1O88207 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Col5a1O88207 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Col5a1O88207 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col5a1O88207 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.69■□□□□ 0.42
Col5a1O88207 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.69■□□□□ 0.42
Col5a1O88207 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Col5a1O88207 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Col5a1O88207 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col5a1O88207 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col5a1O88207 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Col5a1O88207 Gm7290-201ENSMUST00000104990 617 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Gm12918-201ENSMUST00000120234 636 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Gm15710-201ENSMUST00000121821 636 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Gm26524-201ENSMUST00000192339 390 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Gm5075-201ENSMUST00000196916 622 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC17.68■□□□□ 0.42
Col5a1O88207 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Col5a1O88207 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col5a1O88207 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.68■□□□□ 0.42
Col5a1O88207 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Col5a1O88207 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col5a1O88207 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col5a1O88207 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col5a1O88207 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col5a1O88207 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.67■□□□□ 0.42
Col5a1O88207 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.67■□□□□ 0.42
Col5a1O88207 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col5a1O88207 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.67■□□□□ 0.42
Col5a1O88207 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col5a1O88207 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col5a1O88207 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col5a1O88207 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms