Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.5■■□□□ 1.03
Prom1O54990 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.5■■□□□ 1.03
Prom1O54990 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Prom1O54990 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Prom1O54990 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.5■■□□□ 1.03
Prom1O54990 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Prom1O54990 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
Prom1O54990 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.5■■□□□ 1.03
Prom1O54990 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Prom1O54990 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Prom1O54990 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
Prom1O54990 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Prom1O54990 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.49■■□□□ 1.03
Prom1O54990 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Prom1O54990 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Prom1O54990 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Prom1O54990 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Prom1O54990 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.49■■□□□ 1.03
Prom1O54990 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Prom1O54990 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Prom1O54990 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
Prom1O54990 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.49■■□□□ 1.03
Prom1O54990 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.49■■□□□ 1.03
Prom1O54990 Gm5408-201ENSMUST00000197998 747 ntBASIC21.49■■□□□ 1.03
Prom1O54990 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Prom1O54990 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.48■■□□□ 1.03
Prom1O54990 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Prom1O54990 Gm20100-201ENSMUST00000209418 2272 ntBASIC21.48■■□□□ 1.03
Prom1O54990 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC21.47■■□□□ 1.03
Prom1O54990 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.47■■□□□ 1.03
Prom1O54990 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.47■■□□□ 1.03
Prom1O54990 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Prom1O54990 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Prom1O54990 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Prom1O54990 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Prom1O54990 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Prom1O54990 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.46■■□□□ 1.03
Prom1O54990 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Prom1O54990 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Prom1O54990 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Prom1O54990 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.45■■□□□ 1.02
Prom1O54990 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.45■■□□□ 1.02
Prom1O54990 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Prom1O54990 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.45■■□□□ 1.02
Prom1O54990 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prom1O54990 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Prom1O54990 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Prom1O54990 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prom1O54990 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prom1O54990 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Prom1O54990 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Prom1O54990 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Prom1O54990 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Prom1O54990 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Prom1O54990 Gm6211-202ENSMUST00000167849 925 ntBASIC21.42■■□□□ 1.02
Prom1O54990 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Prom1O54990 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Prom1O54990 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Prom1O54990 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.41■■□□□ 1.02
Prom1O54990 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Gm7860-201ENSMUST00000121190 879 ntBASIC21.41■■□□□ 1.02
Prom1O54990 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prom1O54990 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.41■■□□□ 1.02
Prom1O54990 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Prom1O54990 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Prom1O54990 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms