Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Hmgb3O54879 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Hmgb3O54879 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Hmgb3O54879 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Hmgb3O54879 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Hmgb3O54879 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Hmgb3O54879 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC16.06■□□□□ 0.16
Hmgb3O54879 Gm43592-201ENSMUST00000196922 1165 ntBASIC16.06■□□□□ 0.16
Hmgb3O54879 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Hmgb3O54879 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Hmgb3O54879 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC16.05■□□□□ 0.16
Hmgb3O54879 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Hmgb3O54879 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Gm14523-201ENSMUST00000117260 558 ntBASIC16.05■□□□□ 0.16
Hmgb3O54879 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Hmgb3O54879 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC16.04■□□□□ 0.16
Hmgb3O54879 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Hmgb3O54879 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC16.04■□□□□ 0.16
Hmgb3O54879 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
Hmgb3O54879 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Hmgb3O54879 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Hmgb3O54879 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Gm7332-201ENSMUST00000118351 454 ntBASIC16.03■□□□□ 0.16
Hmgb3O54879 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Hmgb3O54879 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC16.03■□□□□ 0.16
Hmgb3O54879 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Hmgb3O54879 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC16.02■□□□□ 0.16
Hmgb3O54879 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.02■□□□□ 0.16
Hmgb3O54879 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Hmgb3O54879 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC16.02■□□□□ 0.16
Hmgb3O54879 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Hmgb3O54879 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Hmgb3O54879 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC16.02■□□□□ 0.15
Hmgb3O54879 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Hmgb3O54879 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC16.02■□□□□ 0.15
Hmgb3O54879 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Hmgb3O54879 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Hmgb3O54879 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Hmgb3O54879 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Hmgb3O54879 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC16.01■□□□□ 0.15
Hmgb3O54879 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Hmgb3O54879 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Hmgb3O54879 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Hmgb3O54879 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC16■□□□□ 0.15
Hmgb3O54879 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC16■□□□□ 0.15
Hmgb3O54879 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Hmgb3O54879 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms