Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim55G3X8Y1 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim55G3X8Y1 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim55G3X8Y1 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim55G3X8Y1 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim55G3X8Y1 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.86■□□□□ 0.77
Trim55G3X8Y1 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim55G3X8Y1 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Trim55G3X8Y1 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim55G3X8Y1 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Trim55G3X8Y1 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim55G3X8Y1 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.83■□□□□ 0.76
Trim55G3X8Y1 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Trim55G3X8Y1 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.81■□□□□ 0.76
Trim55G3X8Y1 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Gm42939-201ENSMUST00000197514 2205 ntBASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
Trim55G3X8Y1 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Gm6627-201ENSMUST00000218299 2386 ntBASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Trim55G3X8Y1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms