Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Gm27275-201ENSMUST00000184318 272 ntBASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Mir7071-201ENSMUST00000184847 69 ntBASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col4a6B1AVK5 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.32■□□□□ 0.84
Col4a6B1AVK5 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col4a6B1AVK5 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Col4a6B1AVK5 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.29■□□□□ 0.84
Col4a6B1AVK5 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
Col4a6B1AVK5 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Gm27032-201ENSMUST00000183124 1116 ntBASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Gm44672-201ENSMUST00000206944 1098 ntBASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col4a6B1AVK5 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Col4a6B1AVK5 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Col4a6B1AVK5 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Gm13181-201ENSMUST00000120117 1069 ntBASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col4a6B1AVK5 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col4a6B1AVK5 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col4a6B1AVK5 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col4a6B1AVK5 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a6B1AVK5 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a6B1AVK5 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a6B1AVK5 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col4a6B1AVK5 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms