Protein–RNA interactions for Protein: A0N8R1

Trav12-1, T cell receptor alpha variable 12-1 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav12-1A0N8R1 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav12-1A0N8R1 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 AC154266.1-201ENSMUST00000223190 503 ntBASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC16.16■□□□□ 0.18
Trav12-1A0N8R1 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav12-1A0N8R1 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav12-1A0N8R1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Trav12-1A0N8R1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav12-1A0N8R1 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Gm9959-201ENSMUST00000068277 390 ntBASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav12-1A0N8R1 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav12-1A0N8R1 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 BC021767-201ENSMUST00000126387 1716 ntBASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC16.09■□□□□ 0.17
Trav12-1A0N8R1 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms