Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Gm9207-201ENSMUST00000198773 1115 ntBASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Pcdhgb8A0A140LI48 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC17.39■□□□□ 0.38
Pcdhgb8A0A140LI48 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Pcdhgb8A0A140LI48 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Gm27454-201ENSMUST00000185090 204 ntBASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Pcdhgb8A0A140LI48 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Pcdhgb8A0A140LI48 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Pcdhgb8A0A140LI48 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Pcdhgb8A0A140LI48 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Pcdhgb8A0A140LI48 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
Pcdhgb8A0A140LI48 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdhgb8A0A140LI48 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdhgb8A0A140LI48 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdhgb8A0A140LI48 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Pcdhgb8A0A140LI48 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Pcdhgb8A0A140LI48 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms