Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 Spcs1-204ENSMUST00000226782 949 ntBASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
Prpf40aQ9R1C7 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Mir7075-201ENSMUST00000184187 82 ntBASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
Prpf40aQ9R1C7 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC21.33■■□□□ 1
Prpf40aQ9R1C7 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Prpf40aQ9R1C7 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Gm45417-201ENSMUST00000209533 758 ntBASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Prpf40aQ9R1C7 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40aQ9R1C7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40aQ9R1C7 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC21.31■■□□□ 1
Prpf40aQ9R1C7 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Prpf40aQ9R1C7 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.31■■□□□ 1
Prpf40aQ9R1C7 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.31■■□□□ 1
Prpf40aQ9R1C7 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40aQ9R1C7 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.3■■□□□ 1
Prpf40aQ9R1C7 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Prpf40aQ9R1C7 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC21.3■■□□□ 1
Prpf40aQ9R1C7 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Prpf40aQ9R1C7 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Prpf40aQ9R1C7 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC21.27■■□□□ 1
Prpf40aQ9R1C7 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40aQ9R1C7 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.27■■□□□ 1
Prpf40aQ9R1C7 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40aQ9R1C7 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Prpf40aQ9R1C7 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Gm6802-201ENSMUST00000167843 1983 ntBASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Prpf40aQ9R1C7 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Gm8493-201ENSMUST00000196881 489 ntBASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC21.26■□□□□ 0.99
Prpf40aQ9R1C7 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Prpf40aQ9R1C7 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms