Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim39Q9ESN2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.03■□□□□ 0.48
Trim39Q9ESN2 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
Trim39Q9ESN2 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim39Q9ESN2 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim39Q9ESN2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trim39Q9ESN2 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim39Q9ESN2 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18■□□□□ 0.47
Trim39Q9ESN2 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Trim39Q9ESN2 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18■□□□□ 0.47
Trim39Q9ESN2 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim39Q9ESN2 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim39Q9ESN2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Krt8-ps-201ENSMUST00000208495 945 ntBASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Trim39Q9ESN2 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trim39Q9ESN2 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 1066.9 ms