Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Chmp2aQ9DB34 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Chmp2aQ9DB34 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Chmp2aQ9DB34 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Chmp2aQ9DB34 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp2aQ9DB34 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Chmp2aQ9DB34 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Chmp2aQ9DB34 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Gm26833-201ENSMUST00000180899 440 ntBASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Chmp2aQ9DB34 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Smad6-203ENSMUST00000179458 273 ntBASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Chmp2aQ9DB34 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Chmp2aQ9DB34 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
Chmp2aQ9DB34 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.21■□□□□ 0.83
Chmp2aQ9DB34 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Gm11421-201ENSMUST00000122124 294 ntBASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Chmp2aQ9DB34 AA386476-201ENSMUST00000098781 1665 ntBASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.19■□□□□ 0.82
Chmp2aQ9DB34 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms