Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Rpap3Q9D706 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rpap3Q9D706 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Rpap3Q9D706 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Rpap3Q9D706 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rpap3Q9D706 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC21.54■■□□□ 1.04
Rpap3Q9D706 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rpap3Q9D706 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.53■■□□□ 1.04
Rpap3Q9D706 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rpap3Q9D706 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC21.52■■□□□ 1.04
Rpap3Q9D706 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Rpap3Q9D706 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
Rpap3Q9D706 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Gm13146-201ENSMUST00000118508 780 ntBASIC21.51■■□□□ 1.03
Rpap3Q9D706 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Rpap3Q9D706 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.5■■□□□ 1.03
Rpap3Q9D706 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.5■■□□□ 1.03
Rpap3Q9D706 Gm7514-201ENSMUST00000209475 934 ntBASIC21.5■■□□□ 1.03
Rpap3Q9D706 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rpap3Q9D706 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.5■■□□□ 1.03
Rpap3Q9D706 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rpap3Q9D706 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.49■■□□□ 1.03
Rpap3Q9D706 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rpap3Q9D706 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Gm38205-201ENSMUST00000192243 258 ntBASIC21.48■■□□□ 1.03
Rpap3Q9D706 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rpap3Q9D706 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.47■■□□□ 1.03
Rpap3Q9D706 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rpap3Q9D706 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rpap3Q9D706 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.46■■□□□ 1.03
Rpap3Q9D706 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rpap3Q9D706 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Rpap3Q9D706 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Rpap3Q9D706 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC21.44■■□□□ 1.02
Rpap3Q9D706 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.44■■□□□ 1.02
Rpap3Q9D706 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms