Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ddx56Q9D0R4 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Ddx56Q9D0R4 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Ddx56Q9D0R4 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ddx56Q9D0R4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ddx56Q9D0R4 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Ss18l2-201ENSMUST00000035113 577 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ddx56Q9D0R4 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ddx56Q9D0R4 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ddx56Q9D0R4 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Ddx56Q9D0R4 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Gm8493-201ENSMUST00000196881 489 ntBASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Ddx56Q9D0R4 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.38■□□□□ 0.85
Ddx56Q9D0R4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Gm43173-201ENSMUST00000202246 593 ntBASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Gm45417-201ENSMUST00000209533 758 ntBASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Ddx56Q9D0R4 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms