Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Brf1Q8CFK2 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Brf1Q8CFK2 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Brf1Q8CFK2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
Brf1Q8CFK2 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
Brf1Q8CFK2 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
Brf1Q8CFK2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC23.53■■□□□ 1.36
Brf1Q8CFK2 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Brf1Q8CFK2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Brf1Q8CFK2 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Gm40848-201ENSMUST00000221998 324 ntBASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Gm10571-201ENSMUST00000097869 1638 ntBASIC23.5■■□□□ 1.35
Brf1Q8CFK2 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Gm11421-201ENSMUST00000122124 294 ntBASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Brf1Q8CFK2 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Gm26833-201ENSMUST00000180899 440 ntBASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Brf1Q8CFK2 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Brf1Q8CFK2 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Gm2011-201ENSMUST00000203124 1263 ntBASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Brf1Q8CFK2 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Brf1Q8CFK2 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Gm43545-201ENSMUST00000196765 2779 ntBASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Brf1Q8CFK2 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Brf1Q8CFK2 Hsf1-204ENSMUST00000226872 2104 ntBASIC23.44■■□□□ 1.34
Brf1Q8CFK2 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Brf1Q8CFK2 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Brf1Q8CFK2 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Brf1Q8CFK2 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 13 ms