Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ccdc28aQ8CEI3 Golph3-205ENSMUST00000228671 2842 ntBASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ccdc28aQ8CEI3 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ccdc28aQ8CEI3 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Gm5784-201ENSMUST00000179344 2478 ntBASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ccdc28aQ8CEI3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 AA386476-201ENSMUST00000098781 1665 ntBASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ccdc28aQ8CEI3 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
Ccdc28aQ8CEI3 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Ccdc28aQ8CEI3 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.43■□□□□ 0.86
Ccdc28aQ8CEI3 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Gm7417-201ENSMUST00000192950 473 ntBASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Ccdc28aQ8CEI3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Ccdc28aQ8CEI3 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ccdc28aQ8CEI3 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms