Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
Vps53Q8CCB4 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Gm10493-201ENSMUST00000097270 612 ntBASIC22.58■■□□□ 1.21
Vps53Q8CCB4 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Vps53Q8CCB4 Gm6085-201ENSMUST00000182774 1470 ntBASIC22.58■■□□□ 1.2
Vps53Q8CCB4 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.2
Vps53Q8CCB4 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC22.58■■□□□ 1.2
Vps53Q8CCB4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
Vps53Q8CCB4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Gm43530-201ENSMUST00000195920 274 ntBASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Gm43060-201ENSMUST00000200621 289 ntBASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Spcs1-204ENSMUST00000226782 949 ntBASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
Vps53Q8CCB4 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Vps53Q8CCB4 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Vps53Q8CCB4 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Vps53Q8CCB4 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Vps53Q8CCB4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Gm42569-201ENSMUST00000200539 472 ntBASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Vps53Q8CCB4 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Vps53Q8CCB4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Vps53Q8CCB4 Gm27405-201ENSMUST00000184201 112 ntBASIC22.51■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 65.6 ms