Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim47Q8C0E3 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Trim47Q8C0E3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim47Q8C0E3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim47Q8C0E3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Gm14281-201ENSMUST00000121700 1294 ntBASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Gm42642-201ENSMUST00000200683 355 ntBASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 AC124392.1-201ENSMUST00000225172 5324 ntBASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Trim47Q8C0E3 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trim47Q8C0E3 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Gm26571-201ENSMUST00000181399 666 ntBASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Gm5297-201ENSMUST00000198555 1171 ntBASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trim47Q8C0E3 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Gm9988-201ENSMUST00000069786 435 ntBASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trim47Q8C0E3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trim47Q8C0E3 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim47Q8C0E3 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim47Q8C0E3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Trim47Q8C0E3 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trim47Q8C0E3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.04
Trim47Q8C0E3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trim47Q8C0E3 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trim47Q8C0E3 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trim47Q8C0E3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
Trim47Q8C0E3 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim47Q8C0E3 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim47Q8C0E3 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trim47Q8C0E3 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC21.54■■□□□ 1.04
Trim47Q8C0E3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms