Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Ccdc40Q8BI79 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Rarb-207ENSMUST00000225921 2756 ntBASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Ccdc40Q8BI79 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ccdc40Q8BI79 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Ccdc40Q8BI79 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Ccdc40Q8BI79 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Ccdc40Q8BI79 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Ccdc40Q8BI79 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Ccdc40Q8BI79 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Ccdc40Q8BI79 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ccdc40Q8BI79 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Ccdc40Q8BI79 Gm13241-201ENSMUST00000094493 780 ntBASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms