Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Gm18284-201ENSMUST00000172604 624 ntBASIC23.09■■□□□ 1.29
Trim56Q80VI1 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trim56Q80VI1 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim56Q80VI1 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Gm27801-201ENSMUST00000184174 223 ntBASIC23.08■■□□□ 1.29
Trim56Q80VI1 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
Trim56Q80VI1 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
Trim56Q80VI1 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
Trim56Q80VI1 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
Trim56Q80VI1 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Trim56Q80VI1 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trim56Q80VI1 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Trim56Q80VI1 Gm10129-202ENSMUST00000193100 1316 ntBASIC23.07■■□□□ 1.28
Trim56Q80VI1 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
Trim56Q80VI1 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trim56Q80VI1 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim56Q80VI1 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim56Q80VI1 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC23.05■■□□□ 1.28
Trim56Q80VI1 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim56Q80VI1 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC23.05■■□□□ 1.28
Trim56Q80VI1 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC23.05■■□□□ 1.28
Trim56Q80VI1 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim56Q80VI1 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Trim56Q80VI1 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Trim56Q80VI1 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
Trim56Q80VI1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Trim56Q80VI1 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim56Q80VI1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Gm14281-201ENSMUST00000121700 1294 ntBASIC23.03■■□□□ 1.28
Trim56Q80VI1 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC23.03■■□□□ 1.28
Trim56Q80VI1 CT030146.1-201ENSMUST00000220919 217 ntBASIC23.03■■□□□ 1.28
Trim56Q80VI1 Gm10493-201ENSMUST00000097270 612 ntBASIC23.03■■□□□ 1.28
Trim56Q80VI1 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim56Q80VI1 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim56Q80VI1 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC23.02■■□□□ 1.28
Trim56Q80VI1 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim56Q80VI1 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
Trim56Q80VI1 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
Trim56Q80VI1 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim56Q80VI1 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim56Q80VI1 Gm5874-201ENSMUST00000096101 508 ntBASIC23.01■■□□□ 1.27
Trim56Q80VI1 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Trim56Q80VI1 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trim56Q80VI1 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trim56Q80VI1 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trim56Q80VI1 Gm8495-201ENSMUST00000188740 694 ntBASIC23■■□□□ 1.27
Trim56Q80VI1 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC23■■□□□ 1.27
Trim56Q80VI1 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trim56Q80VI1 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trim56Q80VI1 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim56Q80VI1 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms