Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ubfd1Q78JW9 Notumos-201ENSMUST00000151998 2659 ntBASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.99■□□□□ 0.63
Ubfd1Q78JW9 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ubfd1Q78JW9 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Ubfd1Q78JW9 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ubfd1Q78JW9 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.96■□□□□ 0.63
Ubfd1Q78JW9 Gm37179-201ENSMUST00000194862 823 ntBASIC18.96■□□□□ 0.63
Ubfd1Q78JW9 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Ubfd1Q78JW9 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.96■□□□□ 0.63
Ubfd1Q78JW9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ubfd1Q78JW9 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ubfd1Q78JW9 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Gm6802-201ENSMUST00000167843 1983 ntBASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ubfd1Q78JW9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ubfd1Q78JW9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ubfd1Q78JW9 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms