Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Ddx58Q6Q899 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Ap3s1-204ENSMUST00000225520 957 ntBASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Ddx58Q6Q899 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Ddx58Q6Q899 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Ddx58Q6Q899 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Gm13146-201ENSMUST00000118508 780 ntBASIC24.16■■□□□ 1.46
Ddx58Q6Q899 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Gm7514-201ENSMUST00000209475 934 ntBASIC24.16■■□□□ 1.46
Ddx58Q6Q899 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Ddx58Q6Q899 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Gm38205-201ENSMUST00000192243 258 ntBASIC24.15■■□□□ 1.46
Ddx58Q6Q899 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Ddx58Q6Q899 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Ddx58Q6Q899 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Ddx58Q6Q899 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Ddx58Q6Q899 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Ddx58Q6Q899 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
Ddx58Q6Q899 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Ddx58Q6Q899 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 CT010467.1-202ENSMUST00000205406 714 ntBASIC24.13■■□□□ 1.45
Ddx58Q6Q899 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Ddx58Q6Q899 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC24.12■■□□□ 1.45
Ddx58Q6Q899 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Ddx58Q6Q899 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
Ddx58Q6Q899 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
Ddx58Q6Q899 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms