Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col7a1Q63870 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col7a1Q63870 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Col7a1Q63870 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC16.54■□□□□ 0.24
Col7a1Q63870 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Col7a1Q63870 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
Col7a1Q63870 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Col7a1Q63870 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
Col7a1Q63870 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.54■□□□□ 0.24
Col7a1Q63870 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC16.54■□□□□ 0.24
Col7a1Q63870 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.54■□□□□ 0.24
Col7a1Q63870 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.53■□□□□ 0.24
Col7a1Q63870 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Col7a1Q63870 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.53■□□□□ 0.24
Col7a1Q63870 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.53■□□□□ 0.24
Col7a1Q63870 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Col7a1Q63870 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Col7a1Q63870 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.52■□□□□ 0.24
Col7a1Q63870 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Col7a1Q63870 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.52■□□□□ 0.23
Col7a1Q63870 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC16.52■□□□□ 0.23
Col7a1Q63870 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
Col7a1Q63870 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Col7a1Q63870 Gm17971-201ENSMUST00000190239 806 ntBASIC16.52■□□□□ 0.23
Col7a1Q63870 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC16.52■□□□□ 0.23
Col7a1Q63870 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col7a1Q63870 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.23
Col7a1Q63870 Gm5417-201ENSMUST00000079706 384 ntBASIC16.52■□□□□ 0.23
Col7a1Q63870 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Col7a1Q63870 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col7a1Q63870 Ank2-226ENSMUST00000189368 339 ntBASIC16.51■□□□□ 0.23
Col7a1Q63870 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col7a1Q63870 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col7a1Q63870 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col7a1Q63870 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Col7a1Q63870 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Col7a1Q63870 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col7a1Q63870 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Col7a1Q63870 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col7a1Q63870 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC16.49■□□□□ 0.23
Col7a1Q63870 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col7a1Q63870 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.49■□□□□ 0.23
Col7a1Q63870 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col7a1Q63870 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.49■□□□□ 0.23
Col7a1Q63870 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col7a1Q63870 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
Col7a1Q63870 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Gm13509-201ENSMUST00000119733 1308 ntBASIC16.48■□□□□ 0.23
Col7a1Q63870 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.48■□□□□ 0.23
Col7a1Q63870 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.48■□□□□ 0.23
Col7a1Q63870 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col7a1Q63870 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Col7a1Q63870 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.47■□□□□ 0.23
Col7a1Q63870 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC16.47■□□□□ 0.23
Col7a1Q63870 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.47■□□□□ 0.23
Col7a1Q63870 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Col7a1Q63870 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Col7a1Q63870 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.46■□□□□ 0.23
Col7a1Q63870 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Col7a1Q63870 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms