Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf3bQ3ULL6 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf3bQ3ULL6 Serp2-204ENSMUST00000228055 705 ntBASIC20.83■□□□□ 0.93
Upf3bQ3ULL6 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Upf3bQ3ULL6 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Upf3bQ3ULL6 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Gm26833-201ENSMUST00000180899 440 ntBASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Upf3bQ3ULL6 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Golph3-202ENSMUST00000226517 2359 ntBASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Upf3bQ3ULL6 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Gm11421-201ENSMUST00000122124 294 ntBASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Upf3bQ3ULL6 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Upf3bQ3ULL6 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3bQ3ULL6 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3bQ3ULL6 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.77■□□□□ 0.92
Upf3bQ3ULL6 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
Upf3bQ3ULL6 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Upf3bQ3ULL6 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Upf3bQ3ULL6 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Upf3bQ3ULL6 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Upf3bQ3ULL6 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Upf3bQ3ULL6 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3bQ3ULL6 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Gm40848-201ENSMUST00000221998 324 ntBASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3bQ3ULL6 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Upf3bQ3ULL6 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Upf3bQ3ULL6 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms