Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.59■□□□□ 0.89
Upf3aQ3ULJ3 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Gm6365-201ENSMUST00000054711 744 ntBASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.58■□□□□ 0.89
Upf3aQ3ULJ3 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
Upf3aQ3ULJ3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.58■□□□□ 0.88
Upf3aQ3ULJ3 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Upf3aQ3ULJ3 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Upf3aQ3ULJ3 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.58■□□□□ 0.88
Upf3aQ3ULJ3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Gm6420-201ENSMUST00000193885 723 ntBASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Upf3aQ3ULJ3 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Upf3aQ3ULJ3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Upf3aQ3ULJ3 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Gm12527-201ENSMUST00000117967 564 ntBASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Upf3aQ3ULJ3 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.53■□□□□ 0.88
Upf3aQ3ULJ3 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Gm20760-201ENSMUST00000179197 648 ntBASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Upf3aQ3ULJ3 Gm43859-201ENSMUST00000200075 1412 ntBASIC20.52■□□□□ 0.87
Upf3aQ3ULJ3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.52■□□□□ 0.87
Upf3aQ3ULJ3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.87
Upf3aQ3ULJ3 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Upf3aQ3ULJ3 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Upf3aQ3ULJ3 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms