Protein–RNA interactions for Protein: Q1W617

Shroom4, Protein Shroom4, mousemouse

Predictions only

Length 1,475 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom4Q1W617 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
Shroom4Q1W617 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
Shroom4Q1W617 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Shroom4Q1W617 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
Shroom4Q1W617 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
Shroom4Q1W617 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Shroom4Q1W617 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
Shroom4Q1W617 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Shroom4Q1W617 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
Shroom4Q1W617 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
Shroom4Q1W617 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Shroom4Q1W617 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
Shroom4Q1W617 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC31.3■■■□□ 2.6
Shroom4Q1W617 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC31.3■■■□□ 2.6
Shroom4Q1W617 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
Shroom4Q1W617 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Shroom4Q1W617 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC31.29■■■□□ 2.6
Shroom4Q1W617 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC31.29■■■□□ 2.6
Shroom4Q1W617 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
Shroom4Q1W617 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Shroom4Q1W617 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
Shroom4Q1W617 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
Shroom4Q1W617 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Gm37035-201ENSMUST00000194809 2148 ntBASIC31.28■■■□□ 2.6
Shroom4Q1W617 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
Shroom4Q1W617 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Shroom4Q1W617 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
Shroom4Q1W617 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
Shroom4Q1W617 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC31.27■■■□□ 2.6
Shroom4Q1W617 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Shroom4Q1W617 Gm44878-201ENSMUST00000205812 1295 ntBASIC31.27■■■□□ 2.6
Shroom4Q1W617 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
Shroom4Q1W617 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC31.27■■■□□ 2.6
Shroom4Q1W617 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
Shroom4Q1W617 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC31.26■■■□□ 2.59
Shroom4Q1W617 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Shroom4Q1W617 Trmt13-210ENSMUST00000198454 880 ntBASIC31.26■■■□□ 2.59
Shroom4Q1W617 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Shroom4Q1W617 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
Shroom4Q1W617 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Shroom4Q1W617 AC131586.2-201ENSMUST00000228370 1512 ntBASIC31.26■■■□□ 2.59
Shroom4Q1W617 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Dmtn-209ENSMUST00000228295 2572 ntBASIC31.25■■■□□ 2.59
Shroom4Q1W617 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
Shroom4Q1W617 Gm27032-201ENSMUST00000183124 1116 ntBASIC31.25■■■□□ 2.59
Shroom4Q1W617 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC31.25■■■□□ 2.59
Shroom4Q1W617 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Rab3c-203ENSMUST00000224180 967 ntBASIC31.24■■■□□ 2.59
Shroom4Q1W617 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Shroom4Q1W617 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Gm12504-201ENSMUST00000120860 2231 ntBASIC31.23■■■□□ 2.59
Shroom4Q1W617 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC31.23■■■□□ 2.59
Shroom4Q1W617 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC31.22■■■□□ 2.59
Shroom4Q1W617 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Shroom4Q1W617 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
Shroom4Q1W617 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC31.21■■■□□ 2.59
Shroom4Q1W617 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
Shroom4Q1W617 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC31.21■■■□□ 2.59
Shroom4Q1W617 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Shroom4Q1W617 Gm37563-201ENSMUST00000192580 1513 ntBASIC31.21■■■□□ 2.59
Shroom4Q1W617 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
Shroom4Q1W617 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC31.2■■■□□ 2.59
Shroom4Q1W617 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Shroom4Q1W617 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Shroom4Q1W617 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC31.2■■■□□ 2.58
Shroom4Q1W617 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Shroom4Q1W617 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms