Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Col17a1Q07563 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Col17a1Q07563 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Col17a1Q07563 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC30.79■■■□□ 2.52
Col17a1Q07563 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Col17a1Q07563 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
Col17a1Q07563 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC30.78■■■□□ 2.52
Col17a1Q07563 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
Col17a1Q07563 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Col17a1Q07563 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC30.78■■■□□ 2.52
Col17a1Q07563 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
Col17a1Q07563 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
Col17a1Q07563 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC30.78■■■□□ 2.52
Col17a1Q07563 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Col17a1Q07563 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC30.77■■■□□ 2.52
Col17a1Q07563 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC30.77■■■□□ 2.52
Col17a1Q07563 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
Col17a1Q07563 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Col17a1Q07563 Gm17971-201ENSMUST00000190239 806 ntBASIC30.76■■■□□ 2.52
Col17a1Q07563 AC175538.1-201ENSMUST00000225343 1269 ntBASIC30.76■■■□□ 2.52
Col17a1Q07563 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
Col17a1Q07563 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Col17a1Q07563 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Col17a1Q07563 AC131586.2-201ENSMUST00000228370 1512 ntBASIC30.76■■■□□ 2.51
Col17a1Q07563 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
Col17a1Q07563 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
Col17a1Q07563 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC30.76■■■□□ 2.51
Col17a1Q07563 H2-K2-201ENSMUST00000174250 1049 ntBASIC30.76■■■□□ 2.51
Col17a1Q07563 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Col17a1Q07563 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
Col17a1Q07563 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Col17a1Q07563 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col17a1Q07563 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
Col17a1Q07563 Gm6345-202ENSMUST00000180900 204 ntBASIC30.74■■■□□ 2.51
Col17a1Q07563 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC30.74■■■□□ 2.51
Col17a1Q07563 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col17a1Q07563 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Col17a1Q07563 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Col17a1Q07563 Gm7461-201ENSMUST00000058918 827 ntBASIC30.73■■■□□ 2.51
Col17a1Q07563 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC30.73■■■□□ 2.51
Col17a1Q07563 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
Col17a1Q07563 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Col17a1Q07563 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC30.72■■■□□ 2.51
Col17a1Q07563 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Col17a1Q07563 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col17a1Q07563 Gm13559-201ENSMUST00000120476 863 ntBASIC30.71■■■□□ 2.51
Col17a1Q07563 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col17a1Q07563 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Col17a1Q07563 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
Col17a1Q07563 Gm44771-201ENSMUST00000206975 626 ntBASIC30.7■■■□□ 2.51
Col17a1Q07563 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC30.7■■■□□ 2.51
Col17a1Q07563 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Col17a1Q07563 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC30.7■■■□□ 2.5
Col17a1Q07563 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col17a1Q07563 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col17a1Q07563 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC30.69■■■□□ 2.5
Col17a1Q07563 Gm23634-201ENSMUST00000175071 91 ntBASIC30.69■■■□□ 2.5
Col17a1Q07563 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col17a1Q07563 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col17a1Q07563 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
Col17a1Q07563 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col17a1Q07563 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col17a1Q07563 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC30.68■■■□□ 2.5
Col17a1Q07563 Gm21814-202ENSMUST00000203277 873 ntBASIC30.68■■■□□ 2.5
Col17a1Q07563 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC30.68■■■□□ 2.5
Col17a1Q07563 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC30.68■■■□□ 2.5
Col17a1Q07563 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Col17a1Q07563 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col17a1Q07563 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col17a1Q07563 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col17a1Q07563 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col17a1Q07563 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC30.67■■■□□ 2.5
Col17a1Q07563 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Col17a1Q07563 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
Col17a1Q07563 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Col17a1Q07563 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
Col17a1Q07563 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
Col17a1Q07563 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC30.65■■■□□ 2.5
Col17a1Q07563 Gm7889-201ENSMUST00000185591 958 ntBASIC30.65■■■□□ 2.5
Col17a1Q07563 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Col17a1Q07563 Gm2399-201ENSMUST00000104944 225 ntBASIC30.64■■■□□ 2.5
Col17a1Q07563 Gm30025-201ENSMUST00000218555 728 ntBASIC30.64■■■□□ 2.5
Col17a1Q07563 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
Col17a1Q07563 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Col17a1Q07563 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Col17a1Q07563 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.49
Col17a1Q07563 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
Col17a1Q07563 AC153890.1-201ENSMUST00000220021 2469 ntBASIC30.63■■■□□ 2.49
Col17a1Q07563 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
Col17a1Q07563 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
Col17a1Q07563 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC30.63■■■□□ 2.49
Col17a1Q07563 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
Col17a1Q07563 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
Col17a1Q07563 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
Col17a1Q07563 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Col17a1Q07563 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
Col17a1Q07563 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
Col17a1Q07563 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Col17a1Q07563 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Col17a1Q07563 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms