Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col4a1P02463 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Col4a1P02463 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC24.34■■□□□ 1.49
Col4a1P02463 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Col4a1P02463 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Col4a1P02463 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
Col4a1P02463 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Col4a1P02463 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Col4a1P02463 Gm6211-202ENSMUST00000167849 925 ntBASIC24.34■■□□□ 1.49
Col4a1P02463 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC24.33■■□□□ 1.49
Col4a1P02463 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Col4a1P02463 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC24.33■■□□□ 1.49
Col4a1P02463 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC24.33■■□□□ 1.49
Col4a1P02463 Gm26524-201ENSMUST00000192339 390 ntBASIC24.33■■□□□ 1.49
Col4a1P02463 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Col4a1P02463 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col4a1P02463 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
Col4a1P02463 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Col4a1P02463 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Col4a1P02463 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col4a1P02463 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC24.31■■□□□ 1.48
Col4a1P02463 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col4a1P02463 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC24.31■■□□□ 1.48
Col4a1P02463 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col4a1P02463 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Col4a1P02463 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
Col4a1P02463 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC24.3■■□□□ 1.48
Col4a1P02463 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC24.3■■□□□ 1.48
Col4a1P02463 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
Col4a1P02463 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Col4a1P02463 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Col4a1P02463 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Col4a1P02463 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
Col4a1P02463 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col4a1P02463 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
Col4a1P02463 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col4a1P02463 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
Col4a1P02463 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Col4a1P02463 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC24.27■■□□□ 1.48
Col4a1P02463 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
Col4a1P02463 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 AC122769.4-201ENSMUST00000228166 901 ntBASIC24.27■■□□□ 1.48
Col4a1P02463 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Col4a1P02463 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC24.27■■□□□ 1.47
Col4a1P02463 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 Gm20100-201ENSMUST00000209418 2272 ntBASIC24.26■■□□□ 1.47
Col4a1P02463 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC24.26■■□□□ 1.47
Col4a1P02463 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC24.26■■□□□ 1.47
Col4a1P02463 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
Col4a1P02463 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC24.26■■□□□ 1.47
Col4a1P02463 Gm6365-201ENSMUST00000054711 744 ntBASIC24.26■■□□□ 1.47
Col4a1P02463 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Col4a1P02463 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Col4a1P02463 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col4a1P02463 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col4a1P02463 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
Col4a1P02463 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Col4a1P02463 Gm7860-201ENSMUST00000121190 879 ntBASIC24.25■■□□□ 1.47
Col4a1P02463 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
Col4a1P02463 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Col4a1P02463 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col4a1P02463 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Col4a1P02463 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Col4a1P02463 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Col4a1P02463 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col4a1P02463 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Col4a1P02463 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col4a1P02463 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Col4a1P02463 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Col4a1P02463 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Col4a1P02463 Gm13042-201ENSMUST00000119244 1955 ntBASIC24.24■■□□□ 1.47
Col4a1P02463 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col4a1P02463 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Col4a1P02463 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
Col4a1P02463 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC24.23■■□□□ 1.47
Col4a1P02463 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col4a1P02463 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col4a1P02463 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Col4a1P02463 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC24.23■■□□□ 1.47
Col4a1P02463 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Col4a1P02463 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms