Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC17.83■□□□□ 0.44
Col5a1O88207 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col5a1O88207 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.83■□□□□ 0.44
Col5a1O88207 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col5a1O88207 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col5a1O88207 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Col5a1O88207 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Col5a1O88207 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col5a1O88207 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col5a1O88207 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.81■□□□□ 0.44
Col5a1O88207 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.81■□□□□ 0.44
Col5a1O88207 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.81■□□□□ 0.44
Col5a1O88207 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Col5a1O88207 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Col5a1O88207 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.8■□□□□ 0.44
Col5a1O88207 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Col5a1O88207 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC17.8■□□□□ 0.44
Col5a1O88207 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Col5a1O88207 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.8■□□□□ 0.44
Col5a1O88207 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Col5a1O88207 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.79■□□□□ 0.44
Col5a1O88207 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Col5a1O88207 Hsf1-207ENSMUST00000228371 2102 ntBASIC17.79■□□□□ 0.44
Col5a1O88207 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Col5a1O88207 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.79■□□□□ 0.44
Col5a1O88207 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Gm13146-201ENSMUST00000118508 780 ntBASIC17.78■□□□□ 0.44
Col5a1O88207 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Col5a1O88207 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.78■□□□□ 0.44
Col5a1O88207 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.78■□□□□ 0.44
Col5a1O88207 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
Col5a1O88207 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Col5a1O88207 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Col5a1O88207 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col5a1O88207 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Col5a1O88207 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
Col5a1O88207 Trmt13-210ENSMUST00000198454 880 ntBASIC17.77■□□□□ 0.44
Col5a1O88207 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.77■□□□□ 0.44
Col5a1O88207 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.77■□□□□ 0.43
Col5a1O88207 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.77■□□□□ 0.43
Col5a1O88207 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Col5a1O88207 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.76■□□□□ 0.43
Col5a1O88207 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.76■□□□□ 0.43
Col5a1O88207 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.76■□□□□ 0.43
Col5a1O88207 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col5a1O88207 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Col5a1O88207 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Col5a1O88207 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.75■□□□□ 0.43
Col5a1O88207 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col5a1O88207 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms