Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1i3O35627 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1i3O35627 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Nr1i3O35627 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
Nr1i3O35627 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Nr1i3O35627 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1i3O35627 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1i3O35627 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Nr1i3O35627 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Nr1i3O35627 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1i3O35627 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Nr1i3O35627 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.92■□□□□ 0.94
Nr1i3O35627 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.92■□□□□ 0.94
Nr1i3O35627 Serp2-204ENSMUST00000228055 705 ntBASIC20.92■□□□□ 0.94
Nr1i3O35627 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Nr1i3O35627 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.92■□□□□ 0.94
Nr1i3O35627 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Nr1i3O35627 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
Nr1i3O35627 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1i3O35627 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1i3O35627 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
Nr1i3O35627 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1i3O35627 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.91■□□□□ 0.94
Nr1i3O35627 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Nr1i3O35627 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1i3O35627 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC20.91■□□□□ 0.94
Nr1i3O35627 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.91■□□□□ 0.94
Nr1i3O35627 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Nr1i3O35627 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Nr1i3O35627 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Nr1i3O35627 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.9■□□□□ 0.94
Nr1i3O35627 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
Nr1i3O35627 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Nr1i3O35627 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Nr1i3O35627 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Nr1i3O35627 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1i3O35627 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1i3O35627 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1i3O35627 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Nr1i3O35627 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1i3O35627 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Nr1i3O35627 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Nr1i3O35627 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Nr1i3O35627 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1i3O35627 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1i3O35627 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Nr1i3O35627 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.87■□□□□ 0.93
Nr1i3O35627 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.87■□□□□ 0.93
Nr1i3O35627 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Nr1i3O35627 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Nr1i3O35627 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Nr1i3O35627 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Nr1i3O35627 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Nr1i3O35627 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Nr1i3O35627 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.86■□□□□ 0.93
Nr1i3O35627 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.86■□□□□ 0.93
Nr1i3O35627 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Nr1i3O35627 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Nr1i3O35627 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.84■□□□□ 0.93
Nr1i3O35627 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.84■□□□□ 0.93
Nr1i3O35627 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Nr1i3O35627 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms