Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clk3O35492 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clk3O35492 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Clk3O35492 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Clk3O35492 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
Clk3O35492 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Gm13241-201ENSMUST00000094493 780 ntBASIC18.43■□□□□ 0.54
Clk3O35492 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.43■□□□□ 0.54
Clk3O35492 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Clk3O35492 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC18.42■□□□□ 0.54
Clk3O35492 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
Clk3O35492 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC18.42■□□□□ 0.54
Clk3O35492 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.42■□□□□ 0.54
Clk3O35492 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Clk3O35492 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.41■□□□□ 0.54
Clk3O35492 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clk3O35492 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.41■□□□□ 0.54
Clk3O35492 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC18.41■□□□□ 0.54
Clk3O35492 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Clk3O35492 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Clk3O35492 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.4■□□□□ 0.54
Clk3O35492 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Clk3O35492 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.39■□□□□ 0.53
Clk3O35492 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Clk3O35492 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Gm8770-201ENSMUST00000121113 1109 ntBASIC18.38■□□□□ 0.53
Clk3O35492 Mir6236-201ENSMUST00000184437 123 ntBASIC18.38■□□□□ 0.53
Clk3O35492 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Clk3O35492 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Clk3O35492 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.37■□□□□ 0.53
Clk3O35492 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Clk3O35492 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Clk3O35492 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Clk3O35492 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.36■□□□□ 0.53
Clk3O35492 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.36■□□□□ 0.53
Clk3O35492 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Clk3O35492 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Clk3O35492 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
Clk3O35492 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Clk3O35492 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Clk3O35492 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.35■□□□□ 0.53
Clk3O35492 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Clk3O35492 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Clk3O35492 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
Clk3O35492 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms