Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn2aA0A0J9YTW6 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn2aA0A0J9YTW6 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Scn2aA0A0J9YTW6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Scn2aA0A0J9YTW6 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Scn2aA0A0J9YTW6 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Scn2aA0A0J9YTW6 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Gm15043-201ENSMUST00000118843 1543 ntBASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Scn2aA0A0J9YTW6 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Scn2aA0A0J9YTW6 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.89■□□□□ 0.46
Scn2aA0A0J9YTW6 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Scn2aA0A0J9YTW6 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
Scn2aA0A0J9YTW6 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.46
Scn2aA0A0J9YTW6 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Scn2aA0A0J9YTW6 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Gm10033-202ENSMUST00000211874 928 ntBASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Scn2aA0A0J9YTW6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Scn2aA0A0J9YTW6 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Scn2aA0A0J9YTW6 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Scn2aA0A0J9YTW6 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms