Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Prpf40aQ9R1C7 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gm27454-201ENSMUST00000185090 204 ntBASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Prpf40aQ9R1C7 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
Prpf40aQ9R1C7 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Prpf40aQ9R1C7 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Prpf40aQ9R1C7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Prpf40aQ9R1C7 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Prpf40aQ9R1C7 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Prpf40aQ9R1C7 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Prpf40aQ9R1C7 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Prpf40aQ9R1C7 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Prpf40aQ9R1C7 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Prpf40aQ9R1C7 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Prpf40aQ9R1C7 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms