Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Ddx56Q9D0R4 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ddx56Q9D0R4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddx56Q9D0R4 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Golph3-202ENSMUST00000226517 2359 ntBASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ddx56Q9D0R4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddx56Q9D0R4 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddx56Q9D0R4 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddx56Q9D0R4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Ddx56Q9D0R4 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Gm12251-201ENSMUST00000117893 792 ntBASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Gm12821-201ENSMUST00000120022 600 ntBASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 AC154266.1-201ENSMUST00000223190 503 ntBASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ddx56Q9D0R4 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.5■□□□□ 0.87
Ddx56Q9D0R4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ddx56Q9D0R4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Appbp2os-202ENSMUST00000206972 447 ntBASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Serp2-204ENSMUST00000228055 705 ntBASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ddx56Q9D0R4 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ddx56Q9D0R4 Mir7075-201ENSMUST00000184187 82 ntBASIC20.47■□□□□ 0.87
Ddx56Q9D0R4 Gm27454-201ENSMUST00000185090 204 ntBASIC20.47■□□□□ 0.87
Ddx56Q9D0R4 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.47■□□□□ 0.87
Ddx56Q9D0R4 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ddx56Q9D0R4 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms