Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC21.69■■□□□ 1.06
Smc1aQ9CU62 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
Smc1aQ9CU62 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Smc1aQ9CU62 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Gm5913-201ENSMUST00000119397 1399 ntBASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Gm43173-201ENSMUST00000202246 593 ntBASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Gm5874-201ENSMUST00000096101 508 ntBASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Smc1aQ9CU62 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Smc1aQ9CU62 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.64■■□□□ 1.06
Smc1aQ9CU62 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Smc1aQ9CU62 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Smc1aQ9CU62 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Smc1aQ9CU62 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Smc1aQ9CU62 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.61■■□□□ 1.05
Smc1aQ9CU62 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms