Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC23.19■■□□□ 1.3
Trim56Q80VI1 AC154266.1-201ENSMUST00000223190 503 ntBASIC23.19■■□□□ 1.3
Trim56Q80VI1 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC23.19■■□□□ 1.3
Trim56Q80VI1 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC23.18■■□□□ 1.3
Trim56Q80VI1 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC23.18■■□□□ 1.3
Trim56Q80VI1 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trim56Q80VI1 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC23.16■■□□□ 1.3
Trim56Q80VI1 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trim56Q80VI1 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Trim56Q80VI1 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Trim56Q80VI1 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Trim56Q80VI1 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Trim56Q80VI1 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC23.13■■□□□ 1.29
Trim56Q80VI1 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trim56Q80VI1 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trim56Q80VI1 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trim56Q80VI1 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim56Q80VI1 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC23.11■■□□□ 1.29
Trim56Q80VI1 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
Trim56Q80VI1 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms