Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.64■□□□□ 0.25
Col7a1Q63870 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.63■□□□□ 0.25
Col7a1Q63870 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.63■□□□□ 0.25
Col7a1Q63870 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Col7a1Q63870 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col7a1Q63870 Gm38205-201ENSMUST00000192243 258 ntBASIC16.63■□□□□ 0.25
Col7a1Q63870 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.63■□□□□ 0.25
Col7a1Q63870 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Col7a1Q63870 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC16.62■□□□□ 0.25
Col7a1Q63870 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.62■□□□□ 0.25
Col7a1Q63870 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col7a1Q63870 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col7a1Q63870 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC16.61■□□□□ 0.25
Col7a1Q63870 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col7a1Q63870 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col7a1Q63870 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col7a1Q63870 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.6■□□□□ 0.25
Col7a1Q63870 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col7a1Q63870 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.6■□□□□ 0.25
Col7a1Q63870 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col7a1Q63870 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col7a1Q63870 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col7a1Q63870 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col7a1Q63870 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Gm2559-201ENSMUST00000201323 363 ntBASIC16.59■□□□□ 0.25
Col7a1Q63870 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.59■□□□□ 0.25
Col7a1Q63870 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col7a1Q63870 Ubl3-204ENSMUST00000201595 2064 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Col7a1Q63870 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Col7a1Q63870 Gm15378-201ENSMUST00000121894 207 ntBASIC16.59■□□□□ 0.25
Col7a1Q63870 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Col7a1Q63870 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col7a1Q63870 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col7a1Q63870 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col7a1Q63870 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Col7a1Q63870 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Col7a1Q63870 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.57■□□□□ 0.24
Col7a1Q63870 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.57■□□□□ 0.24
Col7a1Q63870 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col7a1Q63870 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.56■□□□□ 0.24
Col7a1Q63870 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
Col7a1Q63870 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.56■□□□□ 0.24
Col7a1Q63870 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col7a1Q63870 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
Col7a1Q63870 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col7a1Q63870 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms