Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trim40Q3UWA4 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Gm45444-201ENSMUST00000211394 898 ntBASIC18.27■□□□□ 0.52
Trim40Q3UWA4 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim40Q3UWA4 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim40Q3UWA4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Trim40Q3UWA4 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
Trim40Q3UWA4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Fam105a-203ENSMUST00000226170 3043 ntBASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim40Q3UWA4 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim40Q3UWA4 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Cap2-205ENSMUST00000225824 1634 ntBASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim40Q3UWA4 Gm10620-201ENSMUST00000098379 1332 ntBASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Trim40Q3UWA4 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim40Q3UWA4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms