Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Upf3bQ3ULL6 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Upf3bQ3ULL6 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Upf3bQ3ULL6 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Upf3bQ3ULL6 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC20.91■□□□□ 0.94
Upf3bQ3ULL6 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.91■□□□□ 0.94
Upf3bQ3ULL6 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.91■□□□□ 0.94
Upf3bQ3ULL6 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 AA386476-201ENSMUST00000098781 1665 ntBASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Upf3bQ3ULL6 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.89■□□□□ 0.94
Upf3bQ3ULL6 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Gm43017-201ENSMUST00000198296 752 ntBASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Upf3bQ3ULL6 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Smad6-203ENSMUST00000179458 273 ntBASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Upf3bQ3ULL6 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Upf3bQ3ULL6 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Upf3bQ3ULL6 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Upf3bQ3ULL6 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Upf3bQ3ULL6 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.83■□□□□ 0.93
Upf3bQ3ULL6 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Upf3bQ3ULL6 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms