Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Cdx2P43241 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Cdx2P43241 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Cdx2P43241 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 Gm8520-201ENSMUST00000186517 868 ntBASIC18.66■□□□□ 0.58
Cdx2P43241 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.66■□□□□ 0.58
Cdx2P43241 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.66■□□□□ 0.58
Cdx2P43241 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx2P43241 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx2P43241 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx2P43241 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx2P43241 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC18.65■□□□□ 0.58
Cdx2P43241 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx2P43241 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Cdx2P43241 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.65■□□□□ 0.58
Cdx2P43241 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC18.65■□□□□ 0.58
Cdx2P43241 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx2P43241 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Cdx2P43241 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Cdx2P43241 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.64■□□□□ 0.57
Cdx2P43241 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Cdx2P43241 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Cdx2P43241 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC18.64■□□□□ 0.57
Cdx2P43241 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Cdx2P43241 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Cdx2P43241 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Gm13534-201ENSMUST00000121169 513 ntBASIC18.63■□□□□ 0.57
Cdx2P43241 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Gm10655-201ENSMUST00000098658 1397 ntBASIC18.63■□□□□ 0.57
Cdx2P43241 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx2P43241 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Cdx2P43241 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.62■□□□□ 0.57
Cdx2P43241 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.62■□□□□ 0.57
Cdx2P43241 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.62■□□□□ 0.57
Cdx2P43241 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx2P43241 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.62■□□□□ 0.57
Cdx2P43241 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Gm32051-202ENSMUST00000197905 2385 ntBASIC18.61■□□□□ 0.57
Cdx2P43241 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
Cdx2P43241 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.61■□□□□ 0.57
Cdx2P43241 Gm10252-201ENSMUST00000209541 832 ntBASIC18.61■□□□□ 0.57
Cdx2P43241 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Cdx2P43241 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.61■□□□□ 0.57
Cdx2P43241 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx2P43241 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.61■□□□□ 0.57
Cdx2P43241 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx2P43241 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.6■□□□□ 0.57
Cdx2P43241 Gm6211-202ENSMUST00000167849 925 ntBASIC18.6■□□□□ 0.57
Cdx2P43241 Gm20049-201ENSMUST00000219950 730 ntBASIC18.6■□□□□ 0.57
Cdx2P43241 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx2P43241 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Cdx2P43241 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx2P43241 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx2P43241 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Cdx2P43241 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Cdx2P43241 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Cdx2P43241 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx2P43241 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Cdx2P43241 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 52.2 ms