Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Chmp6P0C0A3 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Chmp6P0C0A3 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC21.17■□□□□ 0.98
Chmp6P0C0A3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Gm12251-201ENSMUST00000117893 792 ntBASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Gm15039-201ENSMUST00000118914 875 ntBASIC21.16■□□□□ 0.98
Chmp6P0C0A3 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Gm6139-201ENSMUST00000079261 882 ntBASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Chmp6P0C0A3 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Spcs1-204ENSMUST00000226782 949 ntBASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Chmp6P0C0A3 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Chmp6P0C0A3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Chmp6P0C0A3 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Chmp6P0C0A3 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Chmp6P0C0A3 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Chmp6P0C0A3 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Chmp6P0C0A3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Gm43017-201ENSMUST00000198296 752 ntBASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Chmp6P0C0A3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Chmp6P0C0A3 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms