Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm11421-201ENSMUST00000122124 294 ntBASIC17.7■□□□□ 0.42
Lmx1bO88609 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lmx1bO88609 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lmx1bO88609 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lmx1bO88609 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Lmx1bO88609 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Lmx1bO88609 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.7■□□□□ 0.42
Lmx1bO88609 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lmx1bO88609 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lmx1bO88609 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Lmx1bO88609 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.69■□□□□ 0.42
Lmx1bO88609 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.69■□□□□ 0.42
Lmx1bO88609 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.69■□□□□ 0.42
Lmx1bO88609 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Gm26571-201ENSMUST00000181399 666 ntBASIC17.69■□□□□ 0.42
Lmx1bO88609 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.69■□□□□ 0.42
Lmx1bO88609 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lmx1bO88609 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.68■□□□□ 0.42
Lmx1bO88609 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.68■□□□□ 0.42
Lmx1bO88609 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.68■□□□□ 0.42
Lmx1bO88609 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.68■□□□□ 0.42
Lmx1bO88609 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lmx1bO88609 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.68■□□□□ 0.42
Lmx1bO88609 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.68■□□□□ 0.42
Lmx1bO88609 Golph3-202ENSMUST00000226517 2359 ntBASIC17.67■□□□□ 0.42
Lmx1bO88609 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.67■□□□□ 0.42
Lmx1bO88609 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.67■□□□□ 0.42
Lmx1bO88609 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.67■□□□□ 0.42
Lmx1bO88609 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lmx1bO88609 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Gm42642-201ENSMUST00000200683 355 ntBASIC17.66■□□□□ 0.42
Lmx1bO88609 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lmx1bO88609 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Lmx1bO88609 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Lmx1bO88609 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.65■□□□□ 0.42
Lmx1bO88609 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lmx1bO88609 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Lmx1bO88609 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Lmx1bO88609 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.64■□□□□ 0.41
Lmx1bO88609 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.64■□□□□ 0.41
Lmx1bO88609 Gm42569-201ENSMUST00000200539 472 ntBASIC17.64■□□□□ 0.41
Lmx1bO88609 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC17.64■□□□□ 0.41
Lmx1bO88609 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Lmx1bO88609 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lmx1bO88609 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.63■□□□□ 0.41
Lmx1bO88609 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Lmx1bO88609 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Lmx1bO88609 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lmx1bO88609 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lmx1bO88609 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Lmx1bO88609 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms