Protein–RNA interactions for Protein: G3X8Y1

Trim55, MCG19772, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim55G3X8Y1 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trim55G3X8Y1 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trim55G3X8Y1 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Trim55G3X8Y1 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.02■□□□□ 0.79
Trim55G3X8Y1 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim55G3X8Y1 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Trim55G3X8Y1 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trim55G3X8Y1 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trim55G3X8Y1 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC20■□□□□ 0.79
Trim55G3X8Y1 Mir3960-201ENSMUST00000198213 73 ntBASIC20■□□□□ 0.79
Trim55G3X8Y1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trim55G3X8Y1 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20■□□□□ 0.79
Trim55G3X8Y1 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Trim55G3X8Y1 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.99■□□□□ 0.79
Trim55G3X8Y1 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trim55G3X8Y1 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Trim55G3X8Y1 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trim55G3X8Y1 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trim55G3X8Y1 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.95■□□□□ 0.78
Trim55G3X8Y1 Cap2-205ENSMUST00000225824 1634 ntBASIC19.94■□□□□ 0.78
Trim55G3X8Y1 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trim55G3X8Y1 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Trim55G3X8Y1 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms